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Copy on write default of pandas >=3.0 crashes library generation

Status: Open.

#269 In MannLabs/alphapeptdeep;

· jonasscheid opened on Mar 1, 2026

Charge predictor for immunopeptidomics?

Status: Open.

#268 In MannLabs/alphapeptdeep;

· jonasscheid opened on Mar 1, 2026

Unable to load the model despite valid model <code>.zip</code> freshly downloaded

bugSomething isn't workingSomething isn't working

Status: Open.

#267 In MannLabs/alphapeptdeep;

· lliligabriel opened on Jan 30, 2026

Tensor conflict

Status: Open.

#262 In MannLabs/alphapeptdeep;

· lliligabriel opened on Sep 18, 2025

Zero ms2 predictions with transfer learning function

bugSomething isn't workingSomething isn't working

Status: Open.

#254 In MannLabs/alphapeptdeep;

· yangkl96 opened on Jul 25, 2025

Can you share the preprocessed pretraining dataset?

questionFurther information is requestedFurther information is requested

Status: Open.

#249 In MannLabs/alphapeptdeep;

· qwopqwop200 opened on Jun 11, 2025

Translation for speclib.tsv fails while handling modifications

bugSomething isn't workingSomething isn't working

Status: Open.

#218 In MannLabs/alphapeptdeep;

· JuliaS92 opened on Nov 28, 2024

@C/N-term mods do not create in silico modified peptides

bugSomething isn't workingSomething isn't working

Status: Open.

#214 In MannLabs/alphapeptdeep;

· S-Watanabe0123 opened on Nov 6, 2024

Requirement to replace our pretrained RT model

enhancementNew feature or requestNew feature or request

Status: Open.

#204 In MannLabs/alphapeptdeep;

· jalew188 opened on Aug 23, 2024

KeyError: 'Modified.Sequence'

Status: Open.

#203 In MannLabs/alphapeptdeep;

· yanzhou-boy opened on Aug 23, 2024

About zipfile.BadZipFile: File is not a zipfile problem

Status: Open.

#200 In MannLabs/alphapeptdeep;

· yanzhou-boy opened on Aug 19, 2024

Can you issue a GUI guide

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#198 In MannLabs/alphapeptdeep;

· yanzhou-boy opened on Aug 16, 2024