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Unable to get academic license

Status: Open.

#2687 In Nesvilab/FragPipe;

· TheBerkemT opened on Mar 3, 2026

Cannot generate a Skyline document

Status: Open.

#2685 In Nesvilab/FragPipe;

· SusannahHallal opened on Mar 3, 2026

pooled DDA-derived spectral library for DIA analysis

Status: Open.

#2684 In Nesvilab/FragPipe;

· WonnShim opened on Mar 3, 2026

Identification of +1 charged peptides

Status: Open.

#2681 In Nesvilab/FragPipe;

· erikgomcar opened on Feb 28, 2026

Critical Pandas Compatibility Issue in Docker container v24.0 affecting DIA EasyPQP Library Generation

Status: Open.

#2679 In Nesvilab/FragPipe;

· JTL-lab opened on Feb 27, 2026

Match Between Runs does not work for unknown reason

Status: Open.

#2676 In Nesvilab/FragPipe;

· RonenGabizon opened on Feb 26, 2026

Why Peptide Reporting Intensity, RT Start, IM Start = 0

Status: Open.

#2675 In Nesvilab/FragPipe;

· hcahaya opened on Feb 24, 2026

Export matched fragments (and batch spectra export) not reporting c- and z-ions

Status: Open.

#2647 In Nesvilab/FragPipe;

· iahendriks opened on Jan 26, 2026

SILAC-TMT hyperplex

Status: Open.

#2625 In Nesvilab/FragPipe;

· JohnSuberu opened on Jan 16, 2026

write sub-mzml files for timstof data

Status: Open.

#2592 In Nesvilab/FragPipe;

· jd690764 opened on Dec 12, 2025

PTM Assignment in Combined Peptide Results

Status: Open.

#2584 In Nesvilab/FragPipe;

· KZ-MS opened on Dec 8, 2025

FileNotFoundError: [Errno 2] No such file or directory - diatracer.psmpkl missing

Status: Open.

#2582 In Nesvilab/FragPipe;

· Althalis opened on Dec 8, 2025