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1. cumulus cumulus Public

   Cloud-based scalable and efficient single-cell genomics workflows

   WDL 68 36

2. pegasus pegasus Public

   A tool for analyzing trascriptomes of millions of single cells.

   Python 91 25

3. pegasusio pegasusio Public

   pegasus io module for reading/writing single-cell genomics data

   Python 8 4

4. demuxEM demuxEM Public

   Demultiplexing cell/nucleus hashing data for single-cell genomics

   Python 2 4

5. harmony-pytorch harmony-pytorch Public

   Python 65 10

6. nmf-torch nmf-torch Public

   Python 12 6